Package: coda4microbiome 0.2.4
coda4microbiome: Compositional Data Analysis for Microbiome Studies
Functions for microbiome data analysis that take into account its compositional nature. Performs variable selection through penalized regression for both, cross-sectional and longitudinal studies, and for binary and continuous outcomes.
Authors:
coda4microbiome_0.2.4.tar.gz
coda4microbiome_0.2.4.zip(r-4.7-any)coda4microbiome_0.2.4.zip(r-4.6-any)coda4microbiome_0.2.4.zip(r-4.5-any)
coda4microbiome_0.2.4.tgz(r-4.6-any)coda4microbiome_0.2.4.tgz(r-4.5-any)
coda4microbiome_0.2.4.tar.gz(r-4.7-any)coda4microbiome_0.2.4.tar.gz(r-4.6-any)
coda4microbiome_0.2.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
coda4microbiome/json (API)
| # Install 'coda4microbiome' in R: |
| install.packages('coda4microbiome', repos = c('https://tonisusin.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/malucalle/coda4microbiome/issues
Last updated from:0435c7319a. Checks:9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 237 | ||
| source / vignettes | OK | 215 | ||
| linux-release-x86_64 | OK | 182 | ||
| macos-release-arm64 | OK | 205 | ||
| macos-oldrel-arm64 | OK | 216 | ||
| windows-devel | OK | 170 | ||
| windows-release | OK | 166 | ||
| windows-oldrel | OK | 170 | ||
| wasm-release | OK | 151 |
Exports:coda_coxnetcoda_glmnetcoda_glmnet_longitudinalcoda_glmnet_longitudinal_nullcoda_glmnet_nullexplore_logratiosexplore_lr_longitudinalexplore_zerosfilter_longitudinalimpute_zeroslogratios_matrixplot_predictionplot_riskscoreplot_signatureplot_signature_curvesplot_survcurvesshannonshannon_effnumshannon_sim
Dependencies:abindbackportsBiocGenericsbootbroomcarcarDatacirclizecliclueclustercodetoolscolorspacecommonmarkComplexHeatmapcorrplotcowplotcpp11crayoncurlDerivdigestdoBydoParalleldplyrexactRankTestsfarverforeachforecastFormulafracdiffgenericsGetoptLongggplot2ggpubrggrepelggsciggsignifggtextglmnetGlobalOptionsgluegridExtragridtextgtableIRangesisobanditeratorsjpeglabelinglatticelifecyclelitedownlme4lmtestmagrittrmarkdownMASSMatrixMatrixModelsmatrixStatsmaxstatmgcvminqamodelrmvtnormnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigplyrpngpolynompROCpurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrjsonrlangrstatixS4VectorsS7scalesshapeSparseMstringistringrsurvivalsurvminertibbletidyrtidyselecttimeDateurcautf8vctrsviridisLitewithrxfunxml2zoo
