Package: coda4microbiome 0.2.4
coda4microbiome: Compositional Data Analysis for Microbiome Studies
Functions for microbiome data analysis that take into account its compositional nature. Performs variable selection through penalized regression for both, cross-sectional and longitudinal studies, and for binary and continuous outcomes.
Authors:
coda4microbiome_0.2.4.tar.gz
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coda4microbiome.pdf |coda4microbiome.html✨
coda4microbiome/json (API)
| # Install 'coda4microbiome' in R: |
| install.packages('coda4microbiome', repos = c('https://tonisusin.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/malucalle/coda4microbiome/issues
Last updated 9 months agofrom:0435c7319a. Checks:9 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 15 2025 |
| R-4.5-win | OK | Mar 15 2025 |
| R-4.5-mac | OK | Mar 15 2025 |
| R-4.5-linux | OK | Mar 15 2025 |
| R-4.4-win | OK | Mar 15 2025 |
| R-4.4-mac | OK | Mar 15 2025 |
| R-4.4-linux | OK | Mar 15 2025 |
| R-4.3-win | OK | Mar 15 2025 |
| R-4.3-mac | OK | Mar 15 2025 |
Exports:coda_coxnetcoda_glmnetcoda_glmnet_longitudinalcoda_glmnet_longitudinal_nullcoda_glmnet_nullexplore_logratiosexplore_lr_longitudinalexplore_zerosfilter_longitudinalimpute_zeroslogratios_matrixplot_predictionplot_riskscoreplot_signatureplot_signature_curvesplot_survcurvesshannonshannon_effnumshannon_sim
Dependencies:abindbackportsBiocGenericsbootbroomcarcarDatacirclizecliclueclustercodetoolscolorspacecommonmarkComplexHeatmapcorrplotcowplotcpp11crayoncurldata.tableDerivdigestdoBydoParalleldplyrevaluateexactRankTestsfansifarverforeachFormulagenericsGetoptLongggplot2ggpubrggrepelggsciggsignifggtextglmnetGlobalOptionsgluegridExtragridtextgtablehighrIRangesisobanditeratorsjpegkm.ciKMsurvknitrlabelinglatticelifecyclelme4magrittrmarkdownMASSMatrixMatrixModelsmatrixStatsmaxstatmgcvmicrobenchmarkminqamodelrmunsellmvtnormnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigplyrpngpolynompROCpurrrquantregR6rbibutilsRColorBrewerRcppRcppEigenRdpackreformulasrjsonrlangrstatixS4VectorsscalesshapeSparseMstringistringrsurvivalsurvminersurvMisctibbletidyrtidyselectutf8vctrsviridisLitewithrxfunxml2xtableyamlzoo
