Package: coda4microbiome 0.2.4

coda4microbiome: Compositional Data Analysis for Microbiome Studies

Functions for microbiome data analysis that take into account its compositional nature. Performs variable selection through penalized regression for both, cross-sectional and longitudinal studies, and for binary and continuous outcomes.

Authors:Malu Calle [aut], Toni Susin [aut, cre], Meritxell Pujolassos [aut]

coda4microbiome_0.2.4.tar.gz
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coda4microbiome.pdf |coda4microbiome.html✨
coda4microbiome/json (API)

Peer review:

Bug tracker:https://github.com/malucalle/coda4microbiome/issues

On CRAN:

19 exports 2 stars 0.71 score 111 dependencies 17 scripts 434 downloads

Last updated 2 months agofrom:0435c7319a. Checks:OK: 7. Indexed: yes.

Exports:coda_coxnetcoda_glmnetcoda_glmnet_longitudinalcoda_glmnet_longitudinal_nullcoda_glmnet_nullexplore_logratiosexplore_lr_longitudinalexplore_zerosfilter_longitudinalimpute_zeroslogratios_matrixplot_predictionplot_riskscoreplot_signatureplot_signature_curvesplot_survcurvesshannonshannon_effnumshannon_sim

Dependencies:abindbackportsBiocGenericsbootbroomcarcarDatacirclizecliclueclustercodetoolscolorspacecommonmarkComplexHeatmapcorrplotcowplotcpp11crayoncurldata.tableDerivdigestdoBydoParalleldplyrevaluateexactRankTestsfansifarverforeachgenericsGetoptLongggplot2ggpubrggrepelggsciggsignifggtextglmnetGlobalOptionsgluegridExtragridtextgtablehighrIRangesisobanditeratorsjpegkm.ciKMsurvknitrlabelinglatticelifecyclelme4magrittrmarkdownMASSMatrixMatrixModelsmatrixStatsmaxstatmgcvmicrobenchmarkminqamodelrmunsellmvtnormnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigplyrpngpolynompROCpurrrquantregR6RColorBrewerRcppRcppEigenrjsonrlangrstatixS4VectorsscalesshapeSparseMstringistringrsurvivalsurvminersurvMisctibbletidyrtidyselectutf8vctrsviridisLitewithrxfunxml2xtableyamlzoo